Utilities

• Assembly Utilities
  • build_assemblies_from_asym_unit()
• Bond Utilities
  • generate_inter_level_bond_hash()
  • get_coarse_graph_as_nodes_and_edges()
  • get_connected_nodes()
  • get_inferred_polymer_bonds()
  • get_struct_conn_bonds()
  • hash_atom_array()
  • hash_graph()
• CCD Utilities
  • aa_chem_comps()
  • atom_array_from_ccd_code()
  • check_ccd_codes_are_available()
  • chem_comp_to_one_letter()
  • dna_chem_comps()
  • get_available_ccd_codes()
  • get_available_ccd_codes_in_biotite()
  • get_available_ccd_codes_in_mirror()
  • get_ccd_component_from_biotite()
  • get_ccd_component_from_mirror()
  • get_chain_type_from_ccd_code()
  • get_chain_type_from_chem_comp_type()
  • get_chem_comp_leaving_atom_names()
  • get_chem_comp_type()
  • get_std_to_alt_atom_name_map()
  • get_unknown_ccd_code_for_chem_comp_type()
  • na_chem_comps()
  • parse_ccd_cif()
  • rna_chem_comps()
• Chain Utilities
  • create_chain_id_generator()
• I/O Utilities
  • get_structure()
  • load_any()
  • read_any()
  • to_cif_buffer()
  • to_cif_file()
  • to_cif_string()
• Non-RCSB Utilities
  • get_identity_assembly_gen_category()
  • get_identity_op_expr_category()
  • initialize_chain_info_from_atom_array()
• Selection Utilities
  • AtomSelection
  • AtomSelectionStack
  • annot_start_stop_idxs()
  • get_annotation()
  • get_residue_starts()
• Sequence Utilities
  • get_1_from_3_letter_code()
  • get_3_from_1_letter_code()
• Testing Utilities
  • assert_same_atom_array()
• Visualization Utilities
  • view()