Transforms

• Atom Array Transforms
  • add_atomic_number_annotation()
  • add_chain_iid_annotation()
  • add_chain_type_annotation()
  • add_charge_from_ccd_codes()
  • add_hydrogen_atom_positions()
  • add_id_and_entity_annotations()
  • add_iid_annotations_to_assemblies()
  • add_molecule_id_annotation()
  • add_molecule_iid_annotation()
  • add_pn_unit_id_annotation()
  • add_pn_unit_iid_annotation()
  • add_polymer_annotation()
  • annotate_entities()
  • ensure_atom_array_stack()
  • is_any_coord_nan()
  • keep_last_residue()
  • maybe_fix_non_polymer_at_symmetry_center()
  • mse_to_met()
  • remove_ccd_components()
  • remove_hydrogens()
  • remove_nan_coords()
  • remove_waters()
  • replace_negative_res_ids_with_auth_seq_id()
  • resolve_arginine_naming_ambiguity()
  • subset_atom_array()
  • update_nonpoly_seq_ids()
• Category Transforms
  • category_to_df()
  • category_to_dict()
  • extract_crystallization_details()
  • get_ligand_of_interest_info()
  • get_metadata_from_category()
  • initialize_chain_info_from_category()
  • load_monomer_sequence_information_from_category()