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  • Tutorial
  • How to Build a Model with AtomWorks
  • Cookbook
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    • Data Mirrors
    • Hugging Face dataset repositories
    • Multiple Sequence Alignment in AtomWorks
  • GitHub
  • Tutorial
  • How to Build a Model with AtomWorks
  • Cookbook
  • Installation
  • Glossary
  • API
  • Examples
  • Contributing
  • Data Mirrors
  • Hugging Face dataset repositories
  • Multiple Sequence Alignment in AtomWorks
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API Modules

  • Core Modules
    • Common Utilities
    • Constants
    • Enumerations
  • IO
    • parser
    • Tools
      • FASTA Tools
      • Inference Tools
      • RDKit Tools
    • Transforms
      • Atom Array Transforms
      • Category Transforms
    • Utilities
      • Assembly Utilities
      • Bond Utilities
      • CCD Utilities
      • Chain Utilities
      • I/O Utilities
      • Non-RCSB Utilities
      • Atom Selection Syntax
      • Query & Selection
      • Segment & Annotation Utilities
      • Sequence Utilities
      • Testing Utilities
      • Visualization Utilities
  • ML
    • Encoding Definitions
    • Samplers
    • Datasets
      • Dataset Architecture
      • Dataset Parsers
    • Pipelines
    • Transforms
    • Diffusion Transforms
    • DNA Transforms
    • Feature Aggregation Transforms
    • Remote MSA generation
    • MSA Transforms
    • Utilities
    • Preprocessing
  • API
  • ML
  • Datasets

Datasets#

This module contains dataset classes and utilities for loading and processing molecular data using a modern, composable architecture.

Dataset Architecture and Migration Guide#

  • Dataset Architecture
    • Modern Dataset Architecture
    • Dataset Classes
    • Functional Loaders
    • Periodic materials
  • Dataset Parsers
    • MetadataRowParser
    • load_example_from_metadata_row()
    • AF2FB_DistillationParser
    • ValidationDFParserLikeAF3
    • GenericDFParser
    • InterfacesDFParser
    • PNUnitsDFParser
    • build_path_from_template()
    • find_existing_file_path()

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Samplers

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Dataset Architecture

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  • Dataset Architecture and Migration Guide
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