Tools

• FASTA Tools
  • one_letter_to_ccd_code()
  • split_generalized_fasta_sequence()
• Inference Tools
  • CCDComponent
  • CIFOrPDBFileComponent
  • ChemicalComponent
  • DNA
  • LigandComponent
  • Peptide
  • Polymer
  • Protein
  • RNA
  • SDFComponent
  • SequenceComponent
  • SmilesComponent
  • assign_res_name_from_atom_array_hash()
  • build_msa_paths_by_chain_id_from_component_list()
  • ccd_code_to_annotated_atom_array()
  • components_to_atom_array()
  • read_chai_fasta()
  • sdf_to_annotated_atom_array()
  • sequence_to_annotated_atom_array()
  • smiles_to_annotated_atom_array()
  • standardize_component_keys()
• RDKit Tools
  • BIOTITE_BOND_TYPE_TO_RDKIT
  • CONVERTIBLE_RDKIT_BOND_TYPES
  • ChEMBLNormalizer
  • RDKIT_BOND_TYPE_TO_BIOTITE
  • RDKIT_HYBRIDIZATION_TO_INT
  • add_hydrogens()
  • atom_array_from_rdkit()
  • atom_array_to_rdkit()
  • ccd_code_to_rdkit()
  • change_metal_bonds_to_dative()
  • element_to_atomic_number()
  • fix_charge_based_on_valence()
  • fix_mol()
  • get_chembl_normalizer()
  • get_morgan_fingerprint_from_rdkit_mol()
  • get_valence_checker()
  • preserve_annotations()
  • remove_hydrogens()
  • sdf_to_rdkit()
  • smiles_to_rdkit()