Contents Menu Expand Light mode Dark mode Auto light/dark, in light mode Auto light/dark, in dark mode Skip to content
foundry 0.1.7 documentation
foundry 0.1.7 documentation

General

  • LICENSE
  • Common Installation Issues
  • Upgrading to AtomWorks 3
  • CONTRIBUTING

Models

  • RFdiffusion3 Documentation
    • Installation of RFdiffusion3 on Unix Systems
    • Inference Calculation Basics
    • RFdiffusion3 — Input Specification & Command-line arguments
    • RFD3 inference acceleration
    • RFdiffusion3 — Output Metrics
    • Common Issues
    • Designability vs. Diversity
    • Tips for Designing Enzymes with RFdiffusion3
    • Protein-Protein Interface Design in RFdiffusion3
    • Enzyme Design in RFdiffusion3
    • Nuclei Acid Binder Design in RFdiffusion3
    • Intermediate Enzyme Design Tutorial
    • Protein and Small Molecule Binder Design with Hydrogen Bond Conditioning
    • Advanced Enzyme Design with RFdiffusion3
    • RFdiffusion3 — Nucleic acid binder design examples
    • RFdiffusion3 — Small molecule binder design examples
    • RFdiffusion3 — Protein binder design examples
    • N-to-C macrocycle design
    • Overview of Symmetry in RFD3
    • RFdiffusion3 — Enzyme design examples
  • RF3 Documentation
  • MPNN Documentation
Back to top
View this page

Welcome to the official documentation for Foundry¶

Foundry is a home for many of the machine learning models produced by Rosetta Commons member labs.

General

  • LICENSE
  • Common Installation Issues
  • Upgrading to AtomWorks 3
  • CONTRIBUTING

Models

  • RFdiffusion3 Documentation
  • RF3 Documentation
  • MPNN Documentation
Next
LICENSE
Copyright © 2025, Institute for Protein Design, University of Washington
Made with Sphinx and @pradyunsg's Furo