.. HBDesigner documentation master file, created by
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HBDesigner Documentation
========================

Welcome to the official documentation for `HBDesigner <https://github.com/Kuhlman-Lab/HBDesigner>`_. 

HBDesigner is a machine learning tool that designs highly-connected hydrogen bonding networks based on user-defined constraints and an input protein backbone. 

Make sure to read through the `HBDesigner README <https://github.com/Kuhlman-Lab/HBDesigner/blob/main/README.md>`_ for an overview of the tool, its features, and how to get started.

.. toctree::
   :maxdepth: 1
   :caption: Contents:

   cli_arguments.rst
   installation_guide.md
   models.md
   examples/index.rst